GgaEX6043202 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34820783-34892309:-
Coord C1 exon
chr7:34892050-34892309
Coord A exon
chr7:34849733-34849943
Coord C2 exon
chr7:34820783-34820950
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTTGTCTTTTTCAGATT
3' ss Score
14.07
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGAAGCTCCTGCTCTGCCACATGGAGGGAGAGGCAAGTGTTACCCCTTCCTCTGCTCCAGCTGAGGGCTTTCTGAAGGGACTGCACTTACAGGGCAAGCTGCACACAGAAAGGTACGCTCTGATATAGTCAGAAGCATGTGCTTGAGAAATGCGAAGATACTGTAAGTTCAATAATATGTTCAGCAGAAGCAGCAGCCTGTAAGTAATATACTGAAAGAGGAACTGGATGAAACATGAAGACAACTTCCAAACGAGAAAA
Seq A exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
Seq C2 exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'3-10,'3-3,9-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF120383=DUF3524=PU(35.7=98.4),PF091806=ProRS-C_1=WD(100=49.2)
C2:
PF120383=DUF3524=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACACAGAAAGGTACGCTC
R:
CCCTTTCCTTGCACTTCTGGA
Band lengths:
295-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]