MmuEX6101103 @ mm10
Exon Skipping
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44756268-44860326:-
Coord C1 exon
chr2:44860291-44860326
Coord A exon
chr2:44825351-44825543
Coord C2 exon
chr2:44756268-44756435
Length
193 bp
Sequences
Splice sites
3' ss Seq
TATTTTTGTTCAATCTGAAGGTT
3' ss Score
6.29
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTACAAGATTGGATATCAGTTCATCTGGATCAGAAG
Seq A exon
GTTTGAACAGGCCAATGAGTATTGTCATCATCGAGGCATTTTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAATTAGATGACTGCGTGTTGTACACTCTTCCTGCAAAGAAATGGCACTGGAGAGCACGCACAGCAGCCTTATACTTCTCACAGAATATTCCCAGCAGTGAGCACTACAG
Seq C2 exon
GACCCTCTTTGCAAGCTCAGTACTCAACCTGACTGAACTGGCTGCCCTTCGGCCTGATCTGGGAAAACTGAAAAAGATCTTATACTTCCATGAAAACCAGTTGGTGTATCCTGTCAAGAAATATCAGGAGAGAGATTTTCAATATGGATACAACCAAATTCTCTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890-'8-34,'8-24,14-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF120383=DUF3524=PU(92.2=98.3)
C2:
PF120383=DUF3524=PU(51.9=98.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATTGGATATCAGTTCATCTGG
R:
CACGAGAGAATTTGGTTGTATCCA
Band lengths:
202-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types