HsaEX1016318 @ hg38
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20887]
Coordinates
chr2:144208603-144211579:-
Coord C1 exon
chr2:144211515-144211579
Coord A exon
chr2:144211014-144211237
Coord C2 exon
chr2:144208603-144208804
Length
224 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTTCTGTTTTTCAGCCT
3' ss Score
10.6
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
ATTGTGCTTCAAGAAGACCATAGGGAAGAACGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA
Seq A exon
CCTCCCACATGCTTAGTGTTCAGTTCTGCCTACTGAGCGTCTTGAATCTATAGGAGCATCTACATGTACTGCCTCCATAGTGGCTGATAATTTGCAGATAACTCGTGAACCAGACCCATAAGAAACATCATGATATGTACTTTAGATTAATCATGGAAAAGGACAAGATGATGAAGAATCAGAAAGCAGTTTTCTTTTCCAATATTTATATTGCTTTCTTTGAG
Seq C2 exon
GATCTGAAGGTTTGAATGGGCCAATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAGAGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTTATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-14/31=13-17
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF120383=DUF3524=PU(35.3=98.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTTCAAGAAGACCATAGGG
R:
TGCTCACTGATGGGAATGGTC
Band lengths:
260-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains