HsaEX0028905 @ hg19
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase-like domain containing 1 [Source:HGNC Symbol;Acc:20887]
Coordinates
chr2:144993243-145090135:-
Coord C1 exon
chr2:145090006-145090135
Coord A exon
chr2:145077286-145077435
Coord C2 exon
chr2:144993243-144993304
Length
150 bp
Sequences
Splice sites
3' ss Seq
GACACTGTCTTATTTTATAGGTG
3' ss Score
11.37
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGGCGGCCGCGGGCCGGGAGGGGCGGCGGCATCCGCGGCGGCCGCGGGGGAGGGGCACGGCGTCAGCGCGTCGCCGGCTGGGCCGCGCCGGTGGCCAGGAGGGAGAGACAAGGAGGAGGAGGAGGAGGAG
Seq A exon
GTGACACTGATGATAAAAATCCATCCAAGAATTTATATGTGACATCTGCAGCAGGTTCAAATCTCTCAGCTATGAGACAAACTGGATACTTCCTAAGGATTGCCATCTATTATGCACAGAGAGCCAAAATCCGTTACTGAAATTGTCTGG
Seq C2 exon
GTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-1/17=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGGAGAGACAAGGAG
R:
ACTGATGTCCCTTTACATATGTCCA
Band lengths:
82-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)