HsaEX0028912 @ hg19
Exon Skipping
Gene
ENSG00000121964 | GTDC1
Description
glycosyltransferase-like domain containing 1 [Source:HGNC Symbol;Acc:20887]
Coordinates
chr2:144993243-145090135:-
Coord C1 exon
chr2:145090006-145090135
Coord A exon
chr2:145075046-145075155
Coord C2 exon
chr2:144993243-144993304
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGTTTTATCTTTTTCTCCAGTGT
3' ss Score
7.75
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGGCGGCCGCGGGCCGGGAGGGGCGGCGGCATCCGCGGCGGCCGCGGGGGAGGGGCACGGCGTCAGCGCGTCGCCGGCTGGGCCGCGCCGGTGGCCAGGAGGGAGAGACAAGGAGGAGGAGGAGGAGGAG
Seq A exon
TGTTTTTTACAAAGGACCCATTTAGTCGTGATATTTATAGGATATGAGGAAGGCAGTGATCCTGGCATTCGTGGACTCCAGAAAACATTTTGGAGAAAAATTAATGTAAG
Seq C2 exon
GTATCTCTGCATTAGCCAGATTGGACATATGTAAAGGGACATCAGTATATCTGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121964_MULTIEX1-2/17=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGGGAGAGACAAGGAG
R:
ACTGATGTCCCTTTACATATGTCCA
Band lengths:
82-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)