HsaEX0029247 @ hg19
Exon Skipping
Gene
ENSG00000140511 | HAPLN3
Description
hyaluronan and proteoglycan link protein 3 [Source:HGNC Symbol;Acc:21446]
Coordinates
chr15:89430406-89438857:-
Coord C1 exon
chr15:89438690-89438857
Coord A exon
chr15:89436205-89436343
Coord C2 exon
chr15:89430406-89430576
Length
139 bp
Sequences
Splice sites
3' ss Seq
TAAGTTCCTTTTTTTTACAGATG
3' ss Score
9.31
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAAGGTGCGCGTGTTCCTTTAAGGGGCTGGTCTGGCGGGAGCGCGGGGGTTTTTCTGCTGCCGCTTCCTTTCTGCCCTTTTAATTTCCCCGAAATCAGACTGCTGCCTTGGACCGGGACAGCTCGCGGCCCCCGAGAGCTCTAGCCGTCGAGGAGCTGCCTGGGGACG
Seq A exon
ATGAGGAAATGGAGGCACAGAGAGGTGAACTTGCCCGAAGTCACTCAGCAGGATGCAGTGTGTCCAGCTCCAATACCGAGCCCAGGTCTGAGTGCCCAGACAGGACTCCAGAAGATTTGGGGAACTATCCACTGCCAAG
Seq C2 exon
TTTGCCCTGGGGCCCCAGCCTGGCCCGGGTCACCCTGGCATGAGGAGATGGGCCTGTTGCTCCTGGTCCCGTTGCTCCTGCTGCCCGGCTCCTACGGACTGCCCTTCTACAACGGCTTCTACTACTCCAACAGCGCCAACGACCAGAACCTAGGCAACGGTCATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140511_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.048
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAATCAGACTGCTGCCTT
R:
CCATGACCGTTGCCTAGGTTC
Band lengths:
246-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)