HsaEX0029247 @ hg38
Exon Skipping
Gene
ENSG00000140511 | HAPLN3
Description
hyaluronan and proteoglycan link protein 3 [Source:HGNC Symbol;Acc:HGNC:21446]
Coordinates
chr15:88887175-88895597:-
Coord C1 exon
chr15:88895459-88895597
Coord A exon
chr15:88892974-88893112
Coord C2 exon
chr15:88887175-88887345
Length
139 bp
Sequences
Splice sites
3' ss Seq
TAAGTTCCTTTTTTTTACAGATG
3' ss Score
9.31
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTCTGGCGGGAGCGCGGGGGTTTTTCTGCTGCCGCTTCCTTTCTGCCCTTTTAATTTCCCCGAAATCAGACTGCTGCCTTGGACCGGGACAGCTCGCGGCCCCCGAGAGCTCTAGCCGTCGAGGAGCTGCCTGGGGACG
Seq A exon
ATGAGGAAATGGAGGCACAGAGAGGTGAACTTGCCCGAAGTCACTCAGCAGGATGCAGTGTGTCCAGCTCCAATACCGAGCCCAGGTCTGAGTGCCCAGACAGGACTCCAGAAGATTTGGGGAACTATCCACTGCCAAG
Seq C2 exon
TTTGCCCTGGGGCCCCAGCCTGGCCCGGGTCACCCTGGCATGAGGAGATGGGCCTGTTGCTCCTGGTCCCGTTGCTCCTGCTGCCCGGCTCCTACGGACTGCCCTTCTACAACGGCTTCTACTACTCCAACAGCGCCAACGACCAGAACCTAGGCAACGGTCATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140511-'2-6,'2-2,4-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.241 C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACTGTGAAGAGGAGGC
R:
CCATGACCGTTGCCTAGGTTC
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development