HsaEX0029268 @ hg19
Exon Skipping
Gene
ENSG00000128708 | HAT1
Description
histone acetyltransferase 1 [Source:HGNC Symbol;Acc:4821]
Coordinates
chr2:172778975-172782151:+
Coord C1 exon
chr2:172778975-172779017
Coord A exon
chr2:172779432-172779627
Coord C2 exon
chr2:172782047-172782151
Length
196 bp
Sequences
Splice sites
3' ss Seq
AGATCCTCCTCCTCTTCCAGGTC
3' ss Score
10.74
5' ss Seq
AGGGTTGGA
5' ss Score
-0.34
Exon sequences
Seq C1 exon
CGTCCTTCCTCAGCCGCGGGTGATCGTAGCTCGGAAATGGCGG
Seq A exon
GTCTCCGTCTACCTTCCACTACAGTCAACTTCTGAGCTAGCGCATTGCTGCCTTGCCCTGCTCTGGCGCTCCCACTTGGATCTCGACTGACTTCGTAGTCGTCTCGTTAATCTGTCACACTTTAGTATTCCGAGGATCGTATTTAGATGCCCTTTGAGAAAGACTTTGTTCCTGAACTGCTCCCTTCTCTTTTAGG
Seq C2 exon
GATTTGGTGCTATGGAGAAATTTTTGGTAGAATATAAGAGTGCAGTGGAGAAGAAACTGGCAGAGTACAAATGTAACACCAACACAGCAATTGAACTAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128708_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103944=Hat1_N=PU(28.6=33.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCCTCAGCCGCGG
R:
TAATTTTAGTTCAATTGCTGTGTTGG
Band lengths:
146-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)