HsaEX0029268 @ hg38
Exon Skipping
Gene
ENSG00000128708 | HAT1
Description
histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]
Coordinates
chr2:171922465-171925641:+
Coord C1 exon
chr2:171922465-171922507
Coord A exon
chr2:171922922-171923117
Coord C2 exon
chr2:171925537-171925641
Length
196 bp
Sequences
Splice sites
3' ss Seq
AGATCCTCCTCCTCTTCCAGGTC
3' ss Score
10.74
5' ss Seq
AGGGTTGGA
5' ss Score
-0.34
Exon sequences
Seq C1 exon
CGTCCTTCCTCAGCCGCGGGTGATCGTAGCTCGGAAATGGCGG
Seq A exon
GTCTCCGTCTACCTTCCACTACAGTCAACTTCTGAGCTAGCGCATTGCTGCCTTGCCCTGCTCTGGCGCTCCCACTTGGATCTCGACTGACTTCGTAGTCGTCTCGTTAATCTGTCACACTTTAGTATTCCGAGGATCGTATTTAGATGCCCTTTGAGAAAGACTTTGTTCCTGAACTGCTCCCTTCTCTTTTAGG
Seq C2 exon
GATTTGGTGCTATGGAGAAATTTTTGGTAGAATATAAGAGTGCAGTGGAGAAGAAACTGGCAGAGTACAAATGTAACACCAACACAGCAATTGAACTAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128708_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF103944=Hat1_N=PU(28.6=33.3)
Main Inclusion Isoform:
ENST00000264108fB3130
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCCTCAGCCGCGG
R:
TAATTTTAGTTCAATTGCTGTGTTGG
Band lengths:
146-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development