HsaEX0030369 @ hg19
Exon Skipping
Gene
ENSG00000105997 | HOXA3
Description
homeobox A3 [Source:HGNC Symbol;Acc:5104]
Coordinates
chr7:27162178-27166639:-
Coord C1 exon
chr7:27166505-27166639
Coord A exon
chr7:27164053-27164168
Coord C2 exon
chr7:27162178-27162261
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAGGCTTTTAACTCCTTCAGGAA
3' ss Score
6.44
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TTCTTGCAAATAATGTGGTCTCAGGCAAGGACACAGCATCTTGGCTGTCTGCTAAAAAAAAAAAATGCCTAGACTCTCAGTGGAAATTGAGTGTCAAGCTGCAAAATCTCAAATGGCAGACTATCATCATTTAAG
Seq A exon
GAAGGCAGGAGAGAGCCCTCGGCAGGGAGGACGGAGCTGGCAGGCCCTCACCAGATCTTGGGGCCTTTTCCGCAGGGTTTCTGCGAGTCCAGGGAGCGCGCCGCGTCCGGGGAAAC
Seq C2 exon
AGCGCCTGGACACCGGAAAAGGCGATTCCCTGAGCGCCTGGAGTTGGAGACAATTCCTGGTTCAGAATTTAAACATCTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105997_MULTIEX1-3/5=2-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATAATGTGGTCTCAGGCA
R:
AAGATGTTTAAATTCTGAACCAGGAA
Band lengths:
210-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)