HsaEX0030369 @ hg38
Exon Skipping
Gene
ENSG00000105997 | HOXA3
Description
homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]
Coordinates
chr7:27122559-27140186:-
Coord C1 exon
chr7:27140083-27140186
Coord A exon
chr7:27124434-27124549
Coord C2 exon
chr7:27122559-27122642
Length
116 bp
Sequences
Splice sites
3' ss Seq
AAGGCTTTTAACTCCTTCAGGAA
3' ss Score
6.44
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GCTACGTGTGCCGCCTGGCCATTCAAACTGTCAATTTTAGGTCCAGAAGTGTCCAAACCACAAGTTCTCAAAACTCTCTGAAAAATGGCTCCCTCCGAGTTAAG
Seq A exon
GAAGGCAGGAGAGAGCCCTCGGCAGGGAGGACGGAGCTGGCAGGCCCTCACCAGATCTTGGGGCCTTTTCCGCAGGGTTTCTGCGAGTCCAGGGAGCGCGCCGCGTCCGGGGAAAC
Seq C2 exon
AGCGCCTGGACACCGGAAAAGGCGATTCCCTGAGCGCCTGGAGTTGGAGACAATTCCTGGTTCAGAATTTAAACATCTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105997_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCCATTCAAACTGTCA
R:
AAGATGTTTAAATTCTGAACCAGGAA
Band lengths:
171-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development