HsaEX0032255 @ hg38
Exon Skipping
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr15:88629897-88639594:+
Coord C1 exon
chr15:88629897-88635700
Coord A exon
chr15:88637362-88637529
Coord C2 exon
chr15:88639343-88639594
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTGGACATCAGGAA
3' ss Score
5.66
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTTTTACTGTATTTACATATGAGATGAAACATCTGTCTGAAATGGCAGCAACCACAGCTGTGGACTTCAATCTGTGGTACATATCAAGCAATTCAGCTTTTTCTTGTAATGTCACGACTTGTTTTCTGCTTCTTGGGAGCACTTCCAGCATCAGTAGTGGCACTTCATATGGGTCCCATGGTGGGATTCAAGGTTTACAGTATTGCACTAAGCATGATGAAAAATACCACAAAAACTGCAAGAAATCACTTTTTCCATCTTACTGGGATACCAGATGTCCTGGATATGAACTGCTGAAGCGGGGATGGGTAGTGTCACACACGTTTTAAGCAGATACTTGCAGCGCTTGAGCTCACTACAGTAACAACAGGAAGTGGCTACATTAACAGCACACTGTGTACTATAGTTAATTTTATGCAGTTACGGTTTCAGACTGCATCCCGACATTGGTTTACATTTCTCTTGACTGAGAATGGTGCCACGTGTGGTCTGTAAGTAG
Seq A exon
GAAATCACAAAATTTCTTGAGCAGAGAAGTGCCTCGGTGATGAACAGTACAAGAGATTAGATTTTGGGAAATGTAACATGGTAGGACTCAAAGGACCCTTTTGAGCAGGGCATGAAGATGGAGGTGGGAGACCCGGGAGCGACTCCTGCGGCCGCACAGGCCAGGCAG
Seq C2 exon
CATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTTGCCGTGGCCAGGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183_MULTIEX1-2/7=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCATCCCGACATTGGTT
R:
ATCGGTGATCTCTCCCTCAGG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development