HsaINT0082133 @ hg38
Intron Retention
Gene
ENSG00000172183 | ISG20
Description
interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr15:88638743-88639594:+
Coord C1 exon
chr15:88638743-88639076
Coord A exon
chr15:88639077-88639342
Coord C2 exon
chr15:88639343-88639594
Length
266 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCCATACCCCTCTCTCCAGCAT
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATCCACTCCACGAACGTCAAATGCGTCATCTGAGGAGGGGGAGGGCCGGGGCAAAGGAGGGGCACCCTGACATGGAGCCTGCCAGCTCCGTCAGCCCTGACTCGGCCCGGAGCTGAGCTCCCCACCTGCCGGTAGCCCAGGAGATGGAGCAGCCCAGCCCACGTGCCCGGCCTTCCGCCCCTGACTTCACTTGATAACAAACTAGAAACTGAAACAGGGTCGGGATGCCGATGCCGGCTTGGAGTTAGAGATGAGTCACCGCTGAGAGCAGCTGCAGTAGCTGAGCAGTGGCAGCAGAGAGGCAGACGTGAGCTGAGGGCGCAGAGGCAGGCAG
Seq A exon
GTGAGAGCGGGAGCTGGAGCAGCAGCTGGGGAGGCAGCGGGAGGGGCCTTCCCGGTCCCCAGGCTGCGGGGCAGGCCAGAGGCCCTGGGACACACGGGCAGGGTAAGGCAGGGGATGGGGGAGGCAAGAGGCCAGCTTCCACTGTGGCCAGGTGGTGTCGGAAACAAAGGGCAGGGCGGAGGGTAAGGCCAGCTGGGGTTGGCTGAGGACACCTGGAGGCTTGGTTTGCCCAAGCGTGAGACCGCCCCCCATACCCCTCTCTCCAG
Seq C2 exon
CATCTCTGAGGGTCCCCAAGGAACATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTGGCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGGAGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTTGCCGTGGCCAGGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172183:ENST00000306072:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGCTTGGAGTTAGAGATG
R:
GCTGACCCGGGTTCTGTAATC
Band lengths:
297-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development