MmuINT1021420 @ mm10
Intron Retention
Gene
ENSMUSG00000039236 | Isg20
Description
interferon-stimulated protein [Source:MGI Symbol;Acc:MGI:1928895]
Coordinates
chr7:78913765-78914574:+
Coord C1 exon
chr7:78913765-78914042
Coord A exon
chr7:78914043-78914321
Coord C2 exon
chr7:78914322-78914574
Length
279 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACCTCCCCATCCTCCAGGGC
3' ss Score
10.16
Exon sequences
Seq C1 exon
GAAAGGGAGGAGTAGGGCAGGGCCAGAGGAGGGACAGCCTGACGCGGCCACCAGCCCTGACTCAACCTGCCAGCCCCCTTACCTGGCCAGCCTTGAGGAGATGGAACAGCCCAGGCTACAAGGCCTGCCCCCACTCCTCAACTTCCCTTGATAATGAACCAGAAACTGAAACTAAAACAGGCAGGCTCCCCGTTAGAGATGAGTCACTTCCCAAAGTGACTGAAGTAGCCGAGAAGTGGAAACAGAGGGGCAGAAGAGAACCCAGGGCACTGAGACAG
Seq A exon
GTGAGAGCAGGTACCAACCACATAGCTGCCCAAACTGGGAGGCAATGGGAGGGGGCTTCGAGGTGGGACAGCCAGACAGGACCAGCAAGCTCTGGGACCTATAGCACACAGAAGCTGAAGGCTGGCAAGAGGCCAGCTTCTGTTGCCAGGTGGCACTGGAGATAATGGGCAGGGCTCAGGGTGTAGTTTGGCAGGGTGGTGGCCCAGGATGCCTGGAGGGCTGTTGGTTCTTGACTGACAGCCTGGCTCTCCCCCACCCCCCACCTCCCCATCCTCCAG
Seq C2 exon
GGCTTTCTGAGGGTCGCCAAGGAGCATGGCAGGCATCCCAGAGGTGGTGGCCATGGACTGTGAGATGGTGGGGCTTGGGCCTCAAAGGGTGAGTGGCCTCGCCCGCTGCAGCATTGTGAACATCCATGGCGCAGTCCTGTATGACAAGTACATCCGACCCGAGGGAGAGATCACGGACTACAGAACCCAAGTCAGCGGGGTCACGCCTCAGCACATGGTGAGGGCCACGCCATTTGGTGAAGCCAGGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039236:ENSMUST00000038142:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCCCCGTTAGAGATGA
R:
CCGCTGACTTGGGTTCTGTAG
Band lengths:
295-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types