BtaINT0077548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014762 | ISG20
Description
interferon stimulated exonuclease gene 20kDa [Source:HGNC Symbol;Acc:HGNC:6130]
Coordinates
chr21:20013719-20014371:+
Coord C1 exon
chr21:20013719-20013824
Coord A exon
chr21:20013825-20014119
Coord C2 exon
chr21:20014120-20014371
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCTGCCGCCCCCTGTCCAGCAC
3' ss Score
6.37
Exon sequences
Seq C1 exon
AAACCAGAAACTGAAACAGGGTCAGATTCCCGGCTTGAAGTCAGAGATGAGTCACTGCTAAGAGCAACTGCAGTAGCTGAGAAAGGGGCATCAGAGAGGCAGGCAG
Seq A exon
GTGAGAGTGGGGGACAGGATGGGGGCTTCCAGACATTTCTCCGGGGCAGTGGCCAGGGGTGGTGGTGGGAGGGGGGCATCTTGGTCCTGAGGCTGCCTGGCAGGACCGGGAGAGGCCGTGGGATCGCCAGGTGAAGAGGCCGGTTGGGGTGGCAAGCAGCCAGCTTCTCTCTGTGCCAGGTGGTGGTTGTGACGAAGGGCAGGGCAGAGGGTGTAGGCTGCCTGGAGGTGGCTGAGGACGCCTGGCACCTCGGCCGGCCTTTCAAATGATGGCTGTCCTGCCGCCCCCTGTCCAG
Seq C2 exon
CACACCTGAGGGTCCTGGTGGAGCATGGCAAGGAGCGCGGACGTGGTGGCCATGGACTGTGAGATGGTGGGGCTGGGGCCCTTCCGGGAGAGTGGCTTGGCTCGCTGCAGCCTTGTGGACTACCACGGCTCCGTGTTGTACGACAAGTTCATCCGGCCCGAGGGTGACATCACTGACTATAGGACCCCGGTCAGCGGAATCACAGCTCGGAACATGGAGGGGGCCACTCCGTTTGCCGTGGCCAGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014762:ENSBTAT00000065058:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(43.9=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGATTCCCGGCTTGAAG
R:
ATGTTCCGAGCTGTGATTCCG
Band lengths:
302-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]