HsaEX0032434 @ hg38
Exon Skipping
Gene
ENSG00000150093 | ITGB1
Description
integrin subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:6153]
Coordinates
chr10:32932515-32935558:-
Coord C1 exon
chr10:32935492-32935558
Coord A exon
chr10:32933351-32933583
Coord C2 exon
chr10:32932515-32932600
Length
233 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTGTGTGTTTTCCAGATT
3' ss Score
11.14
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATGAATTTACAACCAATTTTCTGGATTGGACTGATCAGTTCAGTTTGCTGTGTGTTTGCTCAAACAG
Seq A exon
ATTTTCTATAAGAAGCATATGCTGGTTTTATAATCTCAGAAAAGATACGTTGGAGACAGTCTGTATTAGCGCTTACCATGTAGAAGGCATACTCTTCCTTAGGTAGATGCAAAGAAACCTAAAACATACTTTGAACATAGAGCCTGAGAAATTCTGGGATTATGGATTAGATGAATATGGACTTTTCAGTTATTTAACATACTGAAAGCAAAGGGAAAGCCTTGAAGATTCTT
Seq C2 exon
ATGAAAATAGATGTTTAAAAGCAAATGCCAAATCATGTGGAGAATGTATACAAGCAGGGCCAAATTGTGGGTGGTGCACAAATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150093_MULTIEX1-2/3=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(12.3=34.8)
A:
NA
C2:
PF0143720=PSI=PU(46.3=86.2),PF0036213=Integrin_beta=PU(15.5=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTTTCTGGATTGGACTGATCAGT
R:
TGAATTTGTGCACCACCCACA
Band lengths:
140-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development