HsaEX0032446 @ hg19
Exon Skipping
Gene
ENSG00000160255 | ITGB2
Description
integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) [Source:HGNC Symbol;Acc:6155]
Coordinates
chr21:46330640-46348753:-
Coord C1 exon
chr21:46348569-46348753
Coord A exon
chr21:46340736-46340877
Coord C2 exon
chr21:46330640-46330700
Length
142 bp
Sequences
Splice sites
3' ss Seq
AACCCACCACTTCCTCCAAGGAG
3' ss Score
2.13
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATCCAGGGTGAGGAAGGCAGCCCACACTTTTCTTGGAGACACATCCCCAAAGAAGTCCTCACGTGGCTCCGTTTGGGCAGAAACCATGAATTGAACGGGAAAAGAAATATGTCAAGTATCAGAAAGAAGAGTGGCATGCTTTGACAGCAAGTGGACTCCGAGTCCAGGGCAGAGCCTCAGTTAGG
Seq A exon
GAGGAGCTGAGAGGAACAGGAAGTGTCAGGACTTTACGACCCGCGCCTCCAGCTGAGGTTTCTAGACGTGACCCAGGGCAGACTGGTAGCAAAGCCCCCACGCCCAGCCAGGAGCACCGCCGAGGACTCCAGCACACCGAGG
Seq C2 exon
GACATGCTGGGCCTGCGCCCCCCACTGCTCGCCCTGGTGGGGCTGCTCTCCCTCGGGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160255-'1-18,'1-5,2-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0143720=PSI=PU(3.2=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGGGTGAGGAAGGCAG
R:
CACCCGAGGGAGAGCAGC
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)