HsaEX0032446 @ hg38
Exon Skipping
Gene
ENSG00000160255 | ITGB2
Description
integrin subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:6155]
Coordinates
chr21:44910725-44931989:-
Coord C1 exon
chr21:44931814-44931989
Coord A exon
chr21:44920821-44921050
Coord C2 exon
chr21:44910725-44910785
Length
230 bp
Sequences
Splice sites
3' ss Seq
CATGTCCCACCTGTCTCAAGGGG
3' ss Score
6.78
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGCCACGTTCCAGGGCACCTGGCTGGGACCTGCCGCAGCCTCTGCGCGCAGCGGGCTCCATCCCCCGGGCCACGGATTGGGAGACTGAGGCAGGCGCGAAGCCCGCCGCCCAGCCTCCGCTAGGGAGACCCCGGCCACCTCCAGGCAGTTTTCCTGAAGCCCGGGGCCAGGAGAAG
Seq A exon
GGGCCGCTCTCTGACATCAGAGCTGCTGTAGAGCGGAGAGGGGCAGGGGTGAAGGGCCACGGTGGTGCAACCCACCACTTCCTCCAAGGAGGAGCTGAGAGGAACAGGAAGTGTCAGGACTTTACGACCCGCGCCTCCAGCTGAGGTTTCTAGACGTGACCCAGGGCAGACTGGTAGCAAAGCCCCCACGCCCAGCCAGGAGCACCGCCGAGGACTCCAGCACACCGAGG
Seq C2 exon
GACATGCTGGGCCTGCGCCCCCCACTGCTCGCCCTGGTGGGGCTGCTCTCCCTCGGGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160255_MULTIEX1-3/8=C1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACGTTCCAGGGCAC
R:
GCACCCGAGGGAGAGCAG
Band lengths:
236-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development