HsaALTD1045178-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000227039 | ITGB2-AS1
Description
ITGB2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44304]
Coordinates
chr21:44927641-44929678:+
Coord C1 exon
chr21:44927641-44927663
Coord A exon
chr21:44927664-44927764
Coord C2 exon
chr21:44927854-44929678
Length
101 bp
Sequences
Splice sites
5' ss Seq
GAGGCGAGT
5' ss Score
2.28
3' ss Seq
TCTCATGGGATCCCCCACAGATC
3' ss Score
8.03
Exon sequences
Seq C1 exon
TGTTGATTCAGCTCCCTTTGAAG
Seq A exon
GCGGGTGAGACCTTTTGCAGGCTGGGGGCAGGGGCGGGGGCGGAGAAGAGGGCTGCAGGCAGGGCTGGCAGAGGGGAGGAGGTGACACACACTCCCTGGAG
Seq C2 exon
ATCCATACAAACAGGCTGACCATCAGGGCTGGTCCCAGGCCACCAGGCTGGGTGCAATGCAGAAATGGAGATCTGCCCCGGGGAAGGCAGGTGAGTGTAGGAAGGAGGGAGGGCTGCGAGAAGCTGGGGGCAGCCTCCATCCCCCTGTGGCCTGGGTGGGCCTGTGCCCCCCCAACCCCCCGACGCAGCTTCCCACACTGGGAGCACAGTTCCTCCCTCCTCTGCCTTCCTCTGCGTGGTGTGGCTCCTCCTTGAGGGAGAGAGCTGAGGAGGTGGCATTCTTGCTTCCCTGACTCACCCAAAGGAAGATTTCACAGCCCCTGGCAAGGGCTGCCAGACAGGCTCACCTGTCACCCCCTGTCCAGGGACAGACTGACCGGTAGCCTTGGCTGGGTGGGGAGTTATGCTGGGAAGTCTTCCAGGCCCCCTGGGGGTGGGAAGATGCTCAATGTTCAAAGGAGATGGAACGAGGAAAACAGTTAAGCAACGATGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227039-10-6,11-6,12-6,13-6-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGATTCAGCTCCCTTTGA
R:
GAGGAGGGAGGAACTGTGCTC
Band lengths:
245-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains