HsaEX1018037 @ hg38
Exon Skipping
Gene
ENSG00000227039 | ITGB2-AS1
Description
ITGB2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44304]
Coordinates
chr21:44926868-44929678:+
Coord C1 exon
chr21:44926868-44927004
Coord A exon
chr21:44927625-44927667
Coord C2 exon
chr21:44927854-44929678
Length
43 bp
Sequences
Splice sites
3' ss Seq
TTTTCACTTCTTCCCCCCAGTGA
3' ss Score
9.8
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
ACCTGCGTGCTCTGAGGCTGCCCGACCCTGAGCTCCAGAACAGACCATCGAGTTCAGGAGACAAGCATGTCAGCCATGACACAAGGCAGATGAGAGGGACCCCCAGCGTCCACACGTGGAGGCAGCGGGGGCAGCCG
Seq A exon
TGACTTCCTTCTGCAGTGTTGATTCAGCTCCCTTTGAAGGCGG
Seq C2 exon
ATCCATACAAACAGGCTGACCATCAGGGCTGGTCCCAGGCCACCAGGCTGGGTGCAATGCAGAAATGGAGATCTGCCCCGGGGAAGGCAGGTGAGTGTAGGAAGGAGGGAGGGCTGCGAGAAGCTGGGGGCAGCCTCCATCCCCCTGTGGCCTGGGTGGGCCTGTGCCCCCCCAACCCCCCGACGCAGCTTCCCACACTGGGAGCACAGTTCCTCCCTCCTCTGCCTTCCTCTGCGTGGTGTGGCTCCTCCTTGAGGGAGAGAGCTGAGGAGGTGGCATTCTTGCTTCCCTGACTCACCCAAAGGAAGATTTCACAGCCCCTGGCAAGGGCTGCCAGACAGGCTCACCTGTCACCCCCTGTCCAGGGACAGACTGACCGGTAGCCTTGGCTGGGTGGGGAGTTATGCTGGGAAGTCTTCCAGGCCCCCTGGGGGTGGGAAGATGCTCAATGTTCAAAGGAGATGGAACGAGGAAAACAGTTAAGCAACGATGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227039_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGACACAAGGCAGATGA
R:
CATTTCTGCATTGCACCCAGC
Band lengths:
132-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains