HsaEX0032814 @ hg19
Exon Skipping
Gene
ENSG00000173801 | JUP
Description
junction plakoglobin [Source:HGNC Symbol;Acc:6207]
Coordinates
chr17:39927899-39941407:-
Coord C1 exon
chr17:39941199-39941407
Coord A exon
chr17:39929070-39929178
Coord C2 exon
chr17:39927899-39928114
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCGTCCATTCTCCCCGCAGCCT
3' ss Score
10.32
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CATGCTTTCTGGAGGCCTGCACAGACCTTTCCCACCCGCTTTCCTGAAAGAATTTGACAGGGAAAGTGAGACCGCAGGAAGGCTTTTTGGGGGAAGGTTTCTTCAATGCTAGACTCTCTCAGGCAGAGCTGCATCGGGCCCCCTGCCTTCCCTGCTCCCAATTTCCTGAGACCGCCCCCCCCCACCCAGAATTGGGGATCTTGATCAGG
Seq A exon
CCTCTGACCTCTGCAGGTCAGTTCCCAGGACAGTGGAGCCAAACACAGACCAAGCGGGAAGTTCACCTCCCTGGTACAAAGTTCGGCCCTGCTACTCATTAACCTTCAG
Seq C2 exon
TAGCCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACTCGGGTATCCACTCGGGCGCCAACACCTGCGTGCCCTCCGTCAGCAGCAAGGGCATCATGGAGGAGGATGAGGCCTGCGGGCGCCAGTACACGCTCAAGAAAACCACCACTTACACCCAGGGGGTGCCCCCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173801-'3-7,'3-5,4-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCTGCTCCCAATTTCC
R:
TTTCTTGAGCGTGTACTGGCG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)