HsaEX0032814 @ hg38
Exon Skipping
Gene
ENSG00000173801 | JUP
Description
junction plakoglobin [Source:HGNC Symbol;Acc:HGNC:6207]
Coordinates
chr17:41771647-41786931:-
Coord C1 exon
chr17:41786346-41786931
Coord A exon
chr17:41772818-41772926
Coord C2 exon
chr17:41771647-41771862
Length
109 bp
Sequences
Splice sites
3' ss Seq
GGCGTCCATTCTCCCCGCAGCCT
3' ss Score
10.32
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTCCACGGGACAGTCAGGCGAGATAGCCAGTGAGCTCGCACCAGAGGGTGGGCGTCTCCCCCAGGGGCGGAGCTTCGAGGTGGCGAGGGGCGTGGCTTGGCTGTCAGGTCTCTTCGCCTTTTGTTCGGTTACTGAGTTGCTGCCTTGGCCAGAGTCCGGAGCAGCCGCCGCCCGACCACGCCGAGCTCAGTTCGCTGTCCGCGCCGGCTCCCACCCCGGCCCGACCCCGACCCGGCCCGGTCAGGCCCCATACTCAGGTGCGGGCTATCGGGGGCGCAGGTATCGTTGGGGACAGAGGGGTGGCGAGCGGCCGCGGGGCCGGTCCCAGCCGTCCCTGGGCAGGTGAGGGCCGGTGCCATCGAGCGCCACCCTGCACCGGCGGCAGGGGGCGCGCTGGGGTCCTGGGCGCGGCGACTTGGGGGTCGCGCGGTTCGGGCCGAGCGCGCCTCGGAGCTCCGCGAACCAGAGATCTGAGCAAGGCGGGGAGGGATCCGGACAG
Seq A exon
CCTCTGACCTCTGCAGGTCAGTTCCCAGGACAGTGGAGCCAAACACAGACCAAGCGGGAAGTTCACCTCCCTGGTACAAAGTTCGGCCCTGCTACTCATTAACCTTCAG
Seq C2 exon
TAGCCACGATGGAGGTGATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACTCGGGTATCCACTCGGGCGCCAACACCTGCGTGCCCTCCGTCAGCAGCAAGGGCATCATGGAGGAGGATGAGGCCTGCGGGCGCCAGTACACGCTCAAGAAAACCACCACTTACACCCAGGGGGTGCCCCCCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173801_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.243
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTATCGTTGGGGACAGAGG
R:
GGTTCATCACCTCCATCGTGG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development