HsaEX0033018 @ hg38
Exon Skipping
Gene
ENSG00000157551 | KCNJ15
Description
potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr21:38257046-38297023:+
Coord C1 exon
chr21:38257046-38257185
Coord A exon
chr21:38291606-38291747
Coord C2 exon
chr21:38296926-38297023
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTCCATATTCCAGATA
3' ss Score
9.33
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGAACAGTGAGAGAGTTTTCTTCATTTTGAGGAACCCTAAACACCTATCTTTCCCAAGGCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
Seq A exon
ATAACTTTTAAGTGGTGAAGAGTATAAATCGTGGTTTTCCAAGTGTAGTCTAAGGTCTAACAGCATCGGGGATATCTGGGAAATTATCAGAACTACAGACCCTCTGGCTGCACCCCAAACCTGCTGAATCGGAAATTCTGAG
Seq C2 exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGAGTGAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551_MULTIEX1-6/6=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGTGAGAGAGTTTTCTTCA
R:
CTGGTCACTCACTCCGCAG
Band lengths:
238-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development