HsaEX0033021 @ hg19
Exon Skipping
Gene
ENSG00000153822 | KCNJ16
Description
potassium inwardly-rectifying channel, subfamily J, member 16 [Source:HGNC Symbol;Acc:6262]
Coordinates
chr17:68096799-68127116:+
Coord C1 exon
chr17:68096799-68096907
Coord A exon
chr17:68102842-68102929
Coord C2 exon
chr17:68127020-68127116
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGCAATATTTAATCTTCAGCTT
3' ss Score
4.96
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AATGGGGGATTGAGGCACAGAGTGTTAAAATAGTGAGACACAGGATTCTAACTGGCAGACTGGCACTTTATCTCAATTCTTAACTGCTGTGTTGCCTCTCACTTTAAAG
Seq A exon
CTTTCAGACATCCACATTCCACCCTGGACCTTGCCTGTCTGGTAAGCCCAATCTCTGCAGGTCAGCCATGCAGCTGAGGTGAGGGAAG
Seq C2 exon
GAGTAACTCAAGATGATTTTGATGTTGCAGTTTTAAATTTCACTTTGACTTGAGCTGGGAAATCCTTTGGCCTATTATACCATGGATGCTAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153822_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGGATTGAGGCACAGA
R:
GCCAAAGGATTTCCCAGCTCA
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)