HsaEX0033239 @ hg19
Exon Skipping
Gene
ENSG00000173120 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:13606]
Coordinates
chr11:66949317-66975159:+
Coord C1 exon
chr11:66949317-66949363
Coord A exon
chr11:66953786-66954052
Coord C2 exon
chr11:66974981-66975159
Length
267 bp
Sequences
Splice sites
3' ss Seq
ATGAACGAATTTCTCATCAGAAA
3' ss Score
4.84
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGCCGGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGG
Seq A exon
AAACTTTGGAGGCCAGGAGGCAGTGAGCCAGTGTATTCAAAGTGCTAAAAGGAAAACAAAACAAAACTGTCAACCAAGCATCCTATATCTGGCAAAACTGTCCTTCAAAAGGGGCGAGAGATTAAGACATTCTCAGAAAAACAAAAGCTAAGGAAACTTGTTACCACTGGACCTGCCTTGTAAGAAATGCTCAGGAGAGTCTGCAAGGTGAAATGAAAGGACATTAGATTGTAACTTGAAGCCATATGAAGAAATATCTCGATAAAG
Seq C2 exon
GGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCGGATCCAGACTTCACT
R:
AGGGCCTCTGCACCATATTCT
Band lengths:
220-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)