HsaEX0033239 @ hg38
Exon Skipping
Gene
ENSG00000173120 | KDM2A
Description
lysine demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr11:67181846-67207688:+
Coord C1 exon
chr11:67181846-67181892
Coord A exon
chr11:67185852-67186581
Coord C2 exon
chr11:67207510-67207688
Length
730 bp
Sequences
Splice sites
3' ss Seq
TTCACCATGTGATGATGCAGCAA
3' ss Score
3.45
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGCCGGATCCAGACTTCACTGTGAATGATGTCAAAATGTGTGTGG
Seq A exon
CAAAAAGGCCCTCACCAGATGCTGGCGCCTTGATTTTAGACTTCCCAGCCTCCAGAACTGTGAGCGAATAAATTTCTGTTCATCATAAATTACCTACTCAGGTTTTCTGTCAACAGCAACACAAAATGGACTAAGAGCCTAAAGGAACATTTTGACACCACTAAGCAGACCAACATACACATTATAGAAGTACCAGAAGGAAAATAGAAAGGAGCAGAGAGAATATATATTTGATCAAATAATGGCTGAAAATTTCCCAAATTTGATGAAAGACAGGAGTATAAACATCCAAACAGCTCAATGAACTCCAAGTAAGATGAACTCAGAGACCCTCACCAAGACACATTATAATCAAACTTTCAAAAGCCAAAGACAAACTCTTGAAAGCATCAAGAGAGAAATGACTAAATGATTCATTACATAAAGGTATCCTCAGTAAAATTATGAACGAATTTCTCATCAGAAACTTTGGAGGCCAGGAGGCAGTGAGCCAGTGTATTCAAAGTGCTAAAAGGAAAACAAAACAAAACTGTCAACCAAGCATCCTATATCTGGCAAAACTGTCCTTCAAAAGGGGCGAGAGATTAAGACATTCTCAGAAAAACAAAAGCTAAGGAAACTTGTTACCACTGGACCTGCCTTGTAAGAAATGCTCAGGAGAGTCTGCAAGGTGAAATGAAAGGACATTAGATTGTAACTTGAAGCCATATGAAGAAATATCTCGATAAAG
Seq C2 exon
GGAGTCGTCGCATGGTGGATGTCATGGACGTGAACACACAGAAAGGCATTGAAATGACCATGGCTCAGTGGACACGCTACTATGAGACCCCAGAGGAGGAGCGAGAGAAACTCTATAATGTCATCAGCCTCGAGTTTAGCCACACCAGGCTGGAGAATATGGTGCAGAGGCCCTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173120_MULTIEX2-3/7=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000308783fB3531
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCGGATCCAGACTTCAC
R:
GAGGGCCTCTGCACCATATTC
Band lengths:
222-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development