HsaEX0033521 @ hg38
Exon Skipping
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:6782642-6824293:+
Coord C1 exon
chr4:6782642-6782841
Coord A exon
chr4:6804523-6804606
Coord C2 exon
chr4:6824185-6824293
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTCACTGTTGTGTAGGTA
3' ss Score
7.16
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGCCAGTTGCCGGGTAACGGAGCGGAGCGGCTCCCGGCGCGCCGCCTCCCGCCCTCCGCGGAGTGGCGCTGGGGCCGCCGCCGCCGCTTTACGTAAGGCGCAGGCCAGGGCCGCCCGGCGCTCGGCAGCCGCCCGCAGCCCCTCGGAGCCAGAGGAGAGGCGCCCCCGCCGGCCGCCGCGCCGCCCGGCAGCCTCGGCAG
Seq A exon
GTAGTGTACACTGATAAAGGTAGGGCGCGGTGGACTCTGCCCCTGTAACCGTTCCGGAGAATGCGTTGAGAATGAAGACAACCA
Seq C2 exon
GTTCTGCCGGAGACTTCCATTTGGCCTCAATGTGAAATTAAAGTAGAAAATCACATCTACATGCATGTTGCTATCAGGATGTTGATTCATTAGTCATGCCTGAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-'1-8,'1-6,14-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF153761=DUF4603=PU(4.2=70.1),PF144001=Transglut_i_TM=PU(13.0=15.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAGCCAGAGGAGAGG
R:
CCCTCTTCAGGCATGACTAATGA
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development