HsaEX0033767 @ hg38
Exon Skipping
Gene
ENSG00000196422 | PPP1R26
Description
protein phosphatase 1 regulatory subunit 26 [Source:HGNC Symbol;Acc:HGNC:29089]
Coordinates
chr9:135482683-135484082:+
Coord C1 exon
chr9:135482683-135482815
Coord A exon
chr9:135483352-135483553
Coord C2 exon
chr9:135483950-135484082
Length
202 bp
Sequences
Splice sites
3' ss Seq
CCCAATTATGTGCTTGTCAGGAA
3' ss Score
5.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TCAAAAGTCTATTGAAAAAGCAGAGAGAGAATGCCTCGGTGTGTAAGTGGAGTGATGAGGACCTGATCTCTGGGCCGTGTGGGAACACTGGCTGCCATTTCATCACAGTCAACCTGGACTCACAGAATTTCAA
Seq A exon
GAAGGAAGCGCCTGGTTAACCGGAGAAAGCTCCTGGTAAAGAAGAATCCATAACAGAGGCAAAACATACTGGCCAGTTTTCGCCCACTGCTGAGGTCCTGAGGGCAGCCACAGCCTCTGAGCCAAGGGGAGTTCAGTGTCCATAAGCCTTGGAGGCTTGCTTGCACAAGAACCGCTTTGCACTGCAATTTTGGGGTAGGCAG
Seq C2 exon
GAGCTTGTCGGTTGGGTCAAGAATGAACCTACGCATGACGGCGTGCTGATCCTGGGTTTCTAGTCATCCTTTTTAAGCTGCAAAGAAGCATTTGCAGACGTTGTCTCATGGGTACCGCTTGCCAACTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTATTGAAAAAGCAGAGAGAGA
R:
CCAAAGTTGGCAAGCGGTACC
Band lengths:
260-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development