HsaEX0033765 @ hg38
Exon Skipping
Gene
ENSG00000196422 | PPP1R26
Description
protein phosphatase 1 regulatory subunit 26 [Source:HGNC Symbol;Acc:HGNC:29089]
Coordinates
chr9:135479802-135484082:+
Coord C1 exon
chr9:135479802-135480022
Coord A exon
chr9:135482683-135482815
Coord C2 exon
chr9:135483950-135484082
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTGATTCTGGTAGTCA
3' ss Score
3.66
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GCGCGGCCCGGGCGCGGGGCGGCGGCAGCGGCGGCGCGCGGGGAGGCGGGGAGGCGGGGGGCCCGGCCGGACGCCCCTGCGCCCCCTCCCCGCGCCCCGGCCGAGGGCGGAGCGCGCTGGCCCTGCAGCCTCCGGCCCGCCCCCGGCCCGCCGCCTCCCCCGGGACGTGGGACGCGGGCGCAGGCGGGGTCCGCGCGGCGGGCGGCGGGGGACGGGCGGAG
Seq A exon
TCAAAAGTCTATTGAAAAAGCAGAGAGAGAATGCCTCGGTGTGTAAGTGGAGTGATGAGGACCTGATCTCTGGGCCGTGTGGGAACACTGGCTGCCATTTCATCACAGTCAACCTGGACTCACAGAATTTCAA
Seq C2 exon
GAGCTTGTCGGTTGGGTCAAGAATGAACCTACGCATGACGGCGTGCTGATCCTGGGTTTCTAGTCATCCTTTTTAAGCTGCAAAGAAGCATTTGCAGACGTTGTCTCATGGGTACCGCTTGCCAACTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422-'2-10,'2-6,9-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development