HsaALTD1041527-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000196422 | PPP1R26
Description
protein phosphatase 1 regulatory subunit 26 [Source:HGNC Symbol;Acc:HGNC:29089]
Coordinates
chr9:135479802-135482815:+
Coord C1 exon
chr9:135479802-135480022
Coord A exon
NA
Coord C2 exon
chr9:135482683-135482815
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATTCTCTTTGATTCTGGTAGTCA
3' ss Score
3.66
Exon sequences
Seq C1 exon
GCGCGGCCCGGGCGCGGGGCGGCGGCAGCGGCGGCGCGCGGGGAGGCGGGGAGGCGGGGGGCCCGGCCGGACGCCCCTGCGCCCCCTCCCCGCGCCCCGGCCGAGGGCGGAGCGCGCTGGCCCTGCAGCCTCCGGCCCGCCCCCGGCCCGCCGCCTCCCCCGGGACGTGGGACGCGGGCGCAGGCGGGGTCCGCGCGGCGGGCGGCGGGGGACGGGCGGAG
Seq A exon
NA
Seq C2 exon
TCAAAAGTCTATTGAAAAAGCAGAGAGAGAATGCCTCGGTGTGTAAGTGGAGTGATGAGGACCTGATCTCTGGGCCGTGTGGGAACACTGGCTGCCATTTCATCACAGTCAACCTGGACTCACAGAATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422-2-6,3-6,4-6-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains