HsaEX1029144 @ hg38
Exon Skipping
Gene
ENSG00000225361 | PPP1R26-AS1
Description
PPP1R26 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48717]
Coordinates
chr9:135462727-135480777:-
Coord C1 exon
chr9:135480673-135480777
Coord A exon
chr9:135468088-135468709
Coord C2 exon
chr9:135462727-135464850
Length
622 bp
Sequences
Splice sites
3' ss Seq
TAAACTAAATTCCTCCCAAGGGG
3' ss Score
3.23
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AATTCAGCTCCCAGCCTTCCAGAAGCTGCAATTTTACAACCTCACTACAAGCGTCCCCCAGCAAAGCTGCACCGCCATTTCCTGTGCTTGGGAACTGAAGGCAAG
Seq A exon
GGGAGTTCAGCCTACACCCAGGAATGCACAAGGACAGCTTGGAGCTTAGAAGCAAGTGGAGTTGGTTCATCTCTTTCACTGGCTCATAATTTTGCAACGGCGGTTTCATCTCTACCCTGACAATACCTTTTAGTTTTCTTACCCACTGGGGTCGAGACTTAATTGAAGACCTCAGACGGACAGCATAACACGGAACCTGAGACCTTGATTTGCGGGGACAGGCTTAAAGTGTATTCTGGAGTTGGTGCCCCCACCCCAGGGGCCGGCTCAGAGGGTTCACTTTCCAGCCTAACGGCAGGGGAACCAGAGGCTGCCGACCTGGATCTCACCTTGATGGAGGTCTTGTCACCTTCCTCCTTGGCTGGAGAGACAGACTGTGGATGCTCTCCTGCTGGCCACCCAAAAACAACAAACAGACAAACAAATATGAATGAGGAAAACTTGAAGAGGCCCCACGTGCCAGAGGTGGGACAGCTTGAGATTTGGTGAGGATAATTGCAGTGGCTCAAAACCCATAAAGAAGTTTAAGTCCATGAGTTCACCGTAATCTGAAACAAAAACAAAAACAAAAACAAATTGATCATCTTTGGAGGCTAACAATCAATTCATTATCTAGAGACAG
Seq C2 exon
ACAGAGGCTCACTAGTGGCACGATCTTGGCTGATTGCATCTTCCACCTCCTGGGTTCAAGAGATTCTTGTGCCTTAGCTTCCTGAGTAGCTAAGATTACAGGTGTGCACCACCACGCCCGGCTAATTTTTGTATTTTTAGTTGAGATGAGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCGCCCCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACTGTGGCCGGCCACATTTCCCTTCTGGTGCGCGTCCTCCTGTAGCTGTGGGATCAGGGGAGGTAGAGATGTCTTGTAACTGACTCAAGTTTGGCTGCTTGCCGCAGGAGAAGCGAGGTGTGGTGAAAGGAAAGCAACTTTTATTCAGATGCTAGCAGGTGGGAGAGTGGCCAGGCTCAAGGCTCTAAGGAACCATCTCAGCTTTTTGGACTGCGTGAAGGGCTTTAGGAAGGAGAACTCGGTGTGGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225361-'0-6,'0-5,7-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTTCCTGTGCTTGGGAA
R:
CTACCTCCCCTGATCCCACAG
Band lengths:
343-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains