HsaINT1027796 @ hg38
Intron Retention
Gene
ENSG00000225361 | PPP1R26-AS1
Description
PPP1R26 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48717]
Coordinates
chr9:135468088-135472249:-
Coord C1 exon
chr9:135472077-135472249
Coord A exon
chr9:135468710-135472076
Coord C2 exon
chr9:135468088-135468709
Length
3367 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TAAACTAAATTCCTCCCAAGGGG
3' ss Score
3.23
Exon sequences
Seq C1 exon
GTTCTGAAACCAGCGTCTCTGGTTACAACCAAAGAGGTTGCTCAGTCACACTCCTGAAAGGCAAAAGGAGGTTGGCCAGTAAAAAAGATGTAAACCCTAGATGTAGTTCTTAGTGTGGAAGCCACAGGAGAACTTCCAATGTGGCCACGGGGATCGCCGAGGCTTTTATGCAG
Seq A exon
GTAACTGAGCTGGGTGACCAGCTGCCTGGTTAACAGTTGGGCAGAAGTGACCTATTGTTGTGCTCTGTGCTGTCTACTTACAGCTACCGCATAGCAACATGGTAGAGACTGTGACGTTTTGCTCGGCATCAGGTGAAGGCATTCGGGAGTAAGTTTCACAACAGAAGACAGGCTCAGAAGCAGATCATCCGAGTCGGGGGAGAGAGGCGGCGACTAGTCAGGCTCCCTCGAATCCCAGGCTGTGATTATTATCTGCAGCCTGTGTCACCCAGGATGAAAGGGGATGGAAAAGCCGTGCATACCCTTGGTGACAAAGCCACTCCTGCTCTTAAAGGCTGGAGCAGGACATCTGACACAATCCCAGGTCTCCATGGAGGCAGGGGCATGGCCGGCAGCTGTAGACCACAGCCTCCGGGCTCTGGCGTGGAGGAAGAAAAGGAAACCAGCACAGAATTTTTTTTTTTTTGAGACGGAGTCTGGCTCTGTCCCCAGGCTGGGGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCTGCCTCCAGGATTCAAGTGATTCTCCTACATCAGCCTCCTGAGTAGCTGGGATTACAGGTGCTGGCCACCACGCCAGGGTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTCACCATGTTGGCCAAGCTGGTCTTGAACTCCTGACCTCATGATCAGCTCGCCTCAGCCTCCCAAAGTCTTGGGATTGCAGGCGTGACCCATCGCACCCGGCCAGCACAGAATATTTTTAATTGAAAAAGGAGGGGGCTGCTTTGTGAATTTTTTTTTTTTTTTTTGAGATAGAGTCTTGCTCTGTCCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCAGGATTCAAGCGATTCTCCTACATCAGCCTCCTGAGTAGCTGGGATTACAGGTGCTGGCCACCATGCAGGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTTTCCCCATGTTGGCCAGGCTGGTTTCCTGACCTCAGGTGATCCTCCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCCAACTTTGTGAAAATTCTAAAGGATCAAGAGCAGACTGGGAAAGTGGGACCTTGGTCTTTAAGGCTCAGCTTAGGGAGGTGACAGCTGTGTGCAGCCGTGTCCAGGAAGTGGTCCACGGTCAAGGGAGAACTCTGTAATCTGAGTGTGGAGAAAGGTATTGCACAGTCCCCAGACACCCCTAAACATTTCTTCAGAGCCATCTGAGAACCGGCCCTATCTGGGTCATTGCCATAGACAGAGGACACAGCTTGGGGTGCAGAGGACCCAGCCTGGCCCTGAGGCTGAACCATCTGAATAGATCCTGAACACTTGTGGAGACGGAGCTCTGCTGCCCCGAAACCCCGGGATGGACACAGGAAGACGAGCCCGTGCTTTGTACACCAAAGAAAATGACTGAGGAGTCTCAATCTATCGAGAGGTTTATTTTGCCTGGGTTGAGGACGTGCCCAGGGGAAAGTGTCGGCAAACCAGATCCGCAACTTCAGGAGAAGGATGGGCTCCGCGGGCTAGGCGGGTCCGAAGGAGCACAGTAGGACCTGCGGCCTGCACGATTTCCAAAGAGGGTTTGAGAACTTCCGTATTCAAAGAGGAAAGAGCAGACAGTAGGGAAAAATGGAAAGAAAAAAACGGGAGGGTGGATAAAAGAGGCCAGCGGTTGCATTCTTTTGAGGCGTTGATGAGCCTTCCCTGAATCCCCGTTTTACATGGGAAAGGTGGAAGAGGAACAGTAAACTGTGCATTCATCCTGTGCTCAGTGAACCTGCATCTTTATGGAAGAACAGTAGAGGAGGGAGTCAAAGATGCGTTTGTCTCCCGTGAGCGGAGGGAAGACTTCTAGTCCTGTCTTTGTCCCATACCTGTGCAGATAAGCTGTTAATTTACATTTTCAGGGTGAAATTCAGCAGAACTCTGTTTTAGGACAAAGTTCTTGGAAAAGAAAGAAAGAAAAAAGATGTGTTGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGTCAGGGGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGATGGCACGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGGGAGGTGGAGGCTGCAGTGAACCCAGACCCTGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACCCCATCTCAAAAAAAAAAAAAAAAAGATCTTGGGGACCACAATGTATTTCCTTGTGAGCAAACAGTGAGGGGGGCCCCCTGGGGAGGGGAGTGGCCTTCTGTCTTTGCATCTGTCTATTTAGGAAGACACTGGGAGGTAGTTTTGGGTGACCCAGTTCCCAAGCTTAACTCTTCTTTTTGGCATAGTGAGTTTGGGGTCCTGAGATTTTTATTTTCCTTTTACCTCTTTAAGCTGGAGGAGAAGGAAACTTCTCAGGGATTATCCCAGCACATTATCTTATCTTCCTAGGCTTGAGATAAGACAGAACTGCCTTTGGGCTGCCTGTGTCCCTGGGAGTCCAGAGACCCTGGGTCATATGGCCGGGCAGATGGCAGAGAAAGCTCCATTCAAAATGTCCTGCTCCAAACCTGAGATTCTTATCCTGTCTTAGTAAAACTTGTAAAAATGTGATGGATACATTACAATCTCTGTAACCGCCCAAAGAGTTCACCTTGCCTGCTGTGTAGATAGCGCCATTTTATCAAGACAGAGGAATTGCAGTGGAGAAAGAATAATTCATGCAGAGCCGGCTGTGCAGGAGACCGGAGTTTTATCGTTACTCAAATCAGTCTCCCCGAGCACTGGGGGATGAGAGTTTTTAAGGACAGCGTGGTGGGTGGGGGGAAGCCAGTGAGCCGGGAGTGCTGACTGGTCGGAAATGAAATAGGGAGTCATAGCTGTCTTCTTGCGCTGAGTCAGTTCCTGGGTGGGGCCCACAAGATCAGATGAGCCAGTTTATCGATCTGGGTGGTGCCGGCTGATCCATCAAGTGCAGGATCTGCAAAATAGTTCAAGCACTGGTCTTAGGTTTTACAATCGTGATTTTATCTCCGGGAGCAGTTTGGGGAGAGTCAGAATCTTGCAGCCTCCAGCGACATGACACCTAACCGTAATTTCTAATCTTGTGGCTAATTTGTTAGTCCTACAAAGGCAGTCTAGTCCCCAGGCAAGAAGGGGTTTTGTTTTGGGAAAGGGCTGTTATTCTCTTTGTATCAAACTATAAACTATTAATATAAACTAAATTCCTCCCAAG
Seq C2 exon
GGGAGTTCAGCCTACACCCAGGAATGCACAAGGACAGCTTGGAGCTTAGAAGCAAGTGGAGTTGGTTCATCTCTTTCACTGGCTCATAATTTTGCAACGGCGGTTTCATCTCTACCCTGACAATACCTTTTAGTTTTCTTACCCACTGGGGTCGAGACTTAATTGAAGACCTCAGACGGACAGCATAACACGGAACCTGAGACCTTGATTTGCGGGGACAGGCTTAAAGTGTATTCTGGAGTTGGTGCCCCCACCCCAGGGGCCGGCTCAGAGGGTTCACTTTCCAGCCTAACGGCAGGGGAACCAGAGGCTGCCGACCTGGATCTCACCTTGATGGAGGTCTTGTCACCTTCCTCCTTGGCTGGAGAGACAGACTGTGGATGCTCTCCTGCTGGCCACCCAAAAACAACAAACAGACAAACAAATATGAATGAGGAAAACTTGAAGAGGCCCCACGTGCCAGAGGTGGGACAGCTTGAGATTTGGTGAGGATAATTGCAGTGGCTCAAAACCCATAAAGAAGTTTAAGTCCATGAGTTCACCGTAATCTGAAACAAAAACAAAAACAAAAACAAATTGATCATCTTTGGAGGCTAACAATCAATTCATTATCTAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225361:ENST00000603624:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains