MmuEX0021066 @ mm10
Exon Skipping
Gene
ENSMUSG00000035829 | Ppp1r26
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28447885-28450506:+
Coord C1 exon
chr2:28447885-28447982
Coord A exon
chr2:28448692-28448908
Coord C2 exon
chr2:28450302-28450506
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTATTTGTTTATTTATTTAGACA
3' ss Score
6.59
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
AGTGACAGCTCCCAAGATTGACCAGGTAGCTGGACCAACAACCATTAAGACTGTCAGAGGAGCTCAGTTCTGGGTCCATCGTTATAAGCTGTGAGCAG
Seq A exon
ACAGTTTGGTCTCACTAGAGACCCCTGGCTAAGCCAGGAACTCACTATGCATAGACCAGGCTATCCTGGTGCTTGGACTAAAAGTGTACACCACCATGTCCAGCCCTCACACGGCCGACTTTAAAAGCTGGTAGAAGATGCTTTGAAGTGCAAGCCGAGCAGTGAAGACCTCACCTGGAAGCCTTGCAGAGCATCAGCCTACACCTGAGACTTACAA
Seq C2 exon
GATGTGAAACAGGCTGACCCATAAGCCCTGCCTCTCAGCACCCAGCCTGCCTGCTAGGATGTTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAGTCCAGATGGGAGGCCTTTGGGCAGCCCAGGAGCTTCTGCCTCCCAGACTGCTTCTCTGAGGCTAAAGAGGACGGCTCCAGGGCTTCCGTGAGCGCCAGGGTCCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829-'6-8,'6-4,7-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCCAAGATTGACCAGGT
R:
ATCTGGACCCTGGCGCTC
Band lengths:
296-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types