HsaEX0033765 @ hg19
Exon Skipping
Gene
ENSG00000196422 | KIAA0649
Description
protein phosphatase 1, regulatory subunit 26 [Source:HGNC Symbol;Acc:29089]
Coordinates
chr9:138371648-138375928:+
Coord C1 exon
chr9:138371648-138371868
Coord A exon
chr9:138374529-138374661
Coord C2 exon
chr9:138375796-138375928
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTGATTCTGGTAGTCA
3' ss Score
3.66
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GCGCGGCCCGGGCGCGGGGCGGCGGCAGCGGCGGCGCGCGGGGAGGCGGGGAGGCGGGGGGCCCGGCCGGACGCCCCTGCGCCCCCTCCCCGCGCCCCGGCCGAGGGCGGAGCGCGCTGGCCCTGCAGCCTCCGGCCCGCCCCCGGCCCGCCGCCTCCCCCGGGACGTGGGACGCGGGCGCAGGCGGGGTCCGCGCGGCGGGCGGCGGGGGACGGGCGGAG
Seq A exon
TCAAAAGTCTATTGAAAAAGCAGAGAGAGAATGCCTCGGTGTGTAAGTGGAGTGATGAGGACCTGATCTCTGGGCCGTGTGGGAACACTGGCTGCCATTTCATCACAGTCAACCTGGACTCACAGAATTTCAA
Seq C2 exon
GAGCTTGTCGGTTGGGTCAAGAATGAACCTACGCATGACGGCGTGCTGATCCTGGGTTTCTAGTCATCCTTTTTAAGCTGCAAAGAAGCATTTGCAGACGTTGTCTCATGGGTACCGCTTGCCAACTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196422-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)