MmuALTA1027591-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035829 | Ppp1r26
Description
protein phosphatase 1, regulatory subunit 26 [Source:MGI Symbol;Acc:MGI:2685193]
Coordinates
chr2:28447885-28448908:+
Coord C1 exon
chr2:28447885-28447982
Coord A exon
chr2:28448692-28448794
Coord C2 exon
chr2:28448795-28448908
Length
103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATTTGTTTATTTATTTAGACA
3' ss Score
6.59
Exon sequences
Seq C1 exon
AGTGACAGCTCCCAAGATTGACCAGGTAGCTGGACCAACAACCATTAAGACTGTCAGAGGAGCTCAGTTCTGGGTCCATCGTTATAAGCTGTGAGCAG
Seq A exon
ACAGTTTGGTCTCACTAGAGACCCCTGGCTAAGCCAGGAACTCACTATGCATAGACCAGGCTATCCTGGTGCTTGGACTAAAAGTGTACACCACCATGTCCAG
Seq C2 exon
CCCTCACACGGCCGACTTTAAAAGCTGGTAGAAGATGCTTTGAAGTGCAAGCCGAGCAGTGAAGACCTCACCTGGAAGCCTTGCAGAGCATCAGCCTACACCTGAGACTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035829-6-6,6-5,6-4,6-3-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGCTCCCAAGATTGACC
R:
TGTAAGTCTCAGGTGTAGGCTGA
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types