HsaEX0034240 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176829234-176835532:-
Coord C1 exon
chr2:176835492-176835532
Coord A exon
chr2:176832350-176832550
Coord C2 exon
chr2:176829234-176829317
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGGCTTTTCCCAGTGT
3' ss Score
8.3
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAGGAAAAAAATA
Seq A exon
TGTTTGAATATTCACCTTAGGCTACACAATAACAGAAGAAATGCAAAGAAGAAAGATGTGACTATTATTGTGGAATACTCTTATATGAAAGAAAATGATATAACATCTGAATTAGTAAAAGCATCATCAATTTCAACAGCAAACCTCAAATCAGGGATACCAGACAGTATTTTCAGCATGATAAAAGGATGAGTTTATATG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTACAAGACGGCTAAATTAATTCTTGAAAGGTTTGATCCGGACTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF083957=7tm_7=FE(9.4=100)
A:
PF083957=7tm_7=PD(16.8=37.5)
C2:
PF083957=7tm_7=PD(14.4=71.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)