HsaEX0034240 @ hg38
Exon Skipping
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175964506-175970417:-
Coord C1 exon
chr2:175970199-175970417
Coord A exon
chr2:175967622-175967822
Coord C2 exon
chr2:175964506-175964589
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGGCTTTTCCCAGTGT
3' ss Score
8.3
5' ss Seq
ATGGTATAA
5' ss Score
2.05
Exon sequences
Seq C1 exon
TTCTCAGGTTTTCTTGACACCAAGAAAGAGAGGGAATCAAGAAGATCGGTTGTAAGAGAGCAATTCAACATGAAAATACTGAAGAAGAGATGGGAGAGAGAGAGAGATAATTGTTTTCTTCAGAGTTTTCCACTTTCTATCAGTAACTCTGATCACATGGATATCTATTGTGGGGCTAGTTGATGCATCCCTTCAGATGTGTTGGAAAGAGGACCAAGA
Seq A exon
TGTTTGAATATTCACCTTAGGCTACACAATAACAGAAGAAATGCAAAGAAGAAAGATGTGACTATTATTGTGGAATACTCTTATATGAAAGAAAATGATATAACATCTGAATTAGTAAAAGCATCATCAATTTCAACAGCAAACCTCAAATCAGGGATACCAGACAGTATTTTCAGCATGATAAAAGGATGAGTTTATATG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTACAAGACGGCTAAATTAATTCTTGAAAGGTTTGATCCGGACTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-'26-20,'26-19,27-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PD(23.2=59.0)
A:
PF083957=7tm_7=PD(16.8=37.5)
C2:
PF083957=7tm_7=PD(14.4=71.4)
Main Inclusion Isoform:
ENST00000544803fB3685
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGGTTTTCTTGACACCA
R:
TGCTTTCTTTGAGTCCGGATCA
Band lengths:
299-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development