HsaEX0034245 @ hg19
Exon Skipping
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176860286-176867073:-
Coord C1 exon
chr2:176866888-176867073
Coord A exon
chr2:176865863-176865867
Coord C2 exon
chr2:176860286-176860374
Length
5 bp
Sequences
Splice sites
3' ss Seq
TAACACATTTTCTTAAACAGGAG
3' ss Score
8.29
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
AGCGGCGCGCGCCGACCGCGGCGCCAATTGGCGAGCGGCTGGAGCGCGGGGTTTCATGGGAAGGAGTTGGCCCGGCTTGTCTCTCTGTCAGTGGCGGCTGCTGCCTGCTCTGGAGGCAGGCTGGGCGGTGGCGGCCGAGACTGGCGGGGGTGGACGCCCGGGCCGGGCTGCGCCCGCTTCTTGCAG
Seq A exon
GAGTG
Seq C2 exon
CTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.005
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF083957=7tm_7=PU(5.0=77.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGGAGGCAGGCT
R:
TCAATTGTCCAAAGGAATTCACAG
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)