HsaEX0034245 @ hg38
Exon Skipping
Gene
ENSG00000144320 | LNPK
Description
lunapark, ER junction formation factor [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr2:175995553-176002263:-
Coord C1 exon
chr2:176002160-176002263
Coord A exon
chr2:176001135-176001139
Coord C2 exon
chr2:175995553-175995646
Length
5 bp
Sequences
Splice sites
3' ss Seq
TAACACATTTTCTTAAACAGGAG
3' ss Score
8.29
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
CTCTGTCAGTGGCGGCTGCTGCCTGCTCTGGAGGCAGGCTGGGCGGTGGCGGCCGAGACTGGCGGGGGTGGACGCCCGGGCCGGGCTGCGCCCGCTTCTTGCAG
Seq A exon
GAGTG
Seq C2 exon
CTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.069
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTGGAGGCAGGCT
R:
TCAATTGTCCAAAGGAATTCACAG
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development