HsaEX0034332 @ hg19
Exon Skipping
Gene
ENSG00000213213 | KIAA1984
Description
KIAA1984 [Source:HGNC Symbol;Acc:28236]
Coordinates
chr9:139702192-139704494:+
Coord C1 exon
chr9:139702192-139702778
Coord A exon
chr9:139703707-139703881
Coord C2 exon
chr9:139704140-139704494
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCAGAAAGACTCTTGTGCAGGTT
3' ss Score
0.38
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CCGGGCCCGGAACTGCGCGCCAGAACCGCGTGCGCATGCGCCGACCGCGCGCGCCGCGCCCCCGCGGCCCTCGCGGCGCCCCGTAGCCGCGCACCCCTCCCGTCCCGCCGAGCCGGCGCCAAGATGGCGGCGCTGACTCCTGGAGAGCGGTCGCGCCGGAGGCCGCGGGGGCCGGAGCGGAGCAGCCGCGGCTGAGGTTCCCGAGTCGCCGCTCGGGGCTGCGCTCCGCCGCCGGGACCCCGGCCTCTGGCCGCGCCGGCTCCGGCCTCCGGGGGGGCCGGGGCCGCCGGGACATGGTGCCAGTCGCACCCCTTCCCCGCCGCCGCTGAGCTCGCCGGCCGCGCCCGGGCTGGGACGTCCGAGCGGGAAGATGTTTTCCGCCCTGAAGAAGCTGGTGGGGTCGGACCAGGCCCCGGGCCGGGACAAGAACATCCCCGCCGGGCTGCAGTCCATGAACCAGGCGTTGCAGAGGCGCTTCGCCAAGGGGGTGCAGTACAACA
Seq A exon
GTTTAAAAGCAAGTTCATGAATTCGCGTGCCGTGTGCACGGAGAGAGGCCGTAGTTCCTGGGGCTGGAGCTAGTCCAGGAGGACAGTGAAGATGTCGCCTTCCTTAGTCCCCCGGCCTGTGAGCAAGAGGAAGCTGCAGACCACTCGGGCCACCCTCACCCAGACACCTTTAGCA
Seq C2 exon
AACATACGACGACAAAGAAGATTTTGATGAAGTTCAAATTAGAGTCAGCGTGCTCATCAGAAAGAAAGCGCAGCCAACACGTTTAGGAACAGAAACGGATTATGTTGAAGACAAACAATCCATTGCGTTTGTGTTCAGTAACCCAAGCATCAAAGGAACTTGTGGCTGGGGAGAAGGCTTGACTATTTGAAATCTCAGGACTCCTCTGTCCAGGAGCTCCCAGACTCCCGTGGAGTGGAAGCCTGGGGGCTCGCTGAAGAAGTCACGTGACTGGAACGTGCTTAATGCTTGGCTGTCTGGTAAGGAAAATAAAGTGGTGCATTTTGAATAAAAATAAAAGCTGATTTTAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213213-'22-24,'22-23,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTCCATGAACCAGGC
R:
TAGTCAAGCCTTCTCCCCAGC
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)