HsaEX0034332 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr9:136807740-136810042:+
Coord C1 exon
chr9:136807740-136808326
Coord A exon
chr9:136809255-136809429
Coord C2 exon
chr9:136809688-136810042
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCAGAAAGACTCTTGTGCAGGTT
3' ss Score
0.38
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CCGGGCCCGGAACTGCGCGCCAGAACCGCGTGCGCATGCGCCGACCGCGCGCGCCGCGCCCCCGCGGCCCTCGCGGCGCCCCGTAGCCGCGCACCCCTCCCGTCCCGCCGAGCCGGCGCCAAGATGGCGGCGCTGACTCCTGGAGAGCGGTCGCGCCGGAGGCCGCGGGGGCCGGAGCGGAGCAGCCGCGGCTGAGGTTCCCGAGTCGCCGCTCGGGGCTGCGCTCCGCCGCCGGGACCCCGGCCTCTGGCCGCGCCGGCTCCGGCCTCCGGGGGGGCCGGGGCCGCCGGGACATGGTGCCAGTCGCACCCCTTCCCCGCCGCCGCTGAGCTCGCCGGCCGCGCCCGGGCTGGGACGTCCGAGCGGGAAGATGTTTTCCGCCCTGAAGAAGCTGGTGGGGTCGGACCAGGCCCCGGGCCGGGACAAGAACATCCCCGCCGGGCTGCAGTCCATGAACCAGGCGTTGCAGAGGCGCTTCGCCAAGGGGGTGCAGTACAACA
Seq A exon
GTTTAAAAGCAAGTTCATGAATTCGCGTGCCGTGTGCACGGAGAGAGGCCGTAGTTCCTGGGGCTGGAGCTAGTCCAGGAGGACAGTGAAGATGTCGCCTTCCTTAGTCCCCCGGCCTGTGAGCAAGAGGAAGCTGCAGACCACTCGGGCCACCCTCACCCAGACACCTTTAGCA
Seq C2 exon
AACATACGACGACAAAGAAGATTTTGATGAAGTTCAAATTAGAGTCAGCGTGCTCATCAGAAAGAAAGCGCAGCCAACACGTTTAGGAACAGAAACGGATTATGTTGAAGACAAACAATCCATTGCGTTTGTGTTCAGTAACCCAAGCATCAAAGGAACTTGTGGCTGGGGAGAAGGCTTGACTATTTGAAATCTCAGGACTCCTCTGTCCAGGAGCTCCCAGACTCCCGTGGAGTGGAAGCCTGGGGGCTCGCTGAAGAAGTCACGTGACTGGAACGTGCTTAATGCTTGGCTGTCTGGTAAGGAAAATAAAGTGGTGCATTTTGAATAAAAATAAAAGCTGATTTTAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273066-'12-20,'12-19,13-20
Average complexity
S
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000371663fB1244
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTCCATGAACCAGGC
R:
TAGTCAAGCCTTCTCCCCAGC
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development