HsaEX0035311 @ hg19
Exon Skipping
Gene
ENSG00000050555 | LAMC3
Description
laminin, gamma 3 [Source:HGNC Symbol;Acc:6494]
Coordinates
chr9:133952574-133954685:+
Coord C1 exon
chr9:133952574-133952721
Coord A exon
chr9:133953286-133953468
Coord C2 exon
chr9:133954536-133954685
Length
183 bp
Sequences
Splice sites
3' ss Seq
GGGCCTCTTCCTCCTTACAGTGA
3' ss Score
8.91
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GTACCAGGAGGTCCAGGCGGCCCAGAAAGCACTGAGGACGGCTGTGGCAGAGGTGCTGCCTGAAGCGGAAAGCGTGTTGGCCACCGTGCAGCAAGTTGGCGCAGATACAGCCCCGTACCTGGCCTTGCTGGCTTCCCCGGGAGCTCTG
Seq A exon
TGACATTAGCAGTGTCATCAGATGGACACGGGATGCAATCCCAGCTCTGCCACTCCAGCTCTGTGACCTCGGCCAAGGACTTTCCCTTCCTGAGCCTCAGTCTGTCACATAGAACTCACCCATTAGGTTATTTCGAGGCTGCTTCCATGGGAGCTGGACAGAGATTCGGGAGCAATGCACGAG
Seq C2 exon
CCTCAGAAGTCCCGGGCTGAAGACCTGGGCCTGAAGGCGAAGGCCCTGGAGAAGACAGTTGCATCATGGCAGCACATGGCCACTGAGGCTGCCCGAACCCTCCAGACTGCTGCCCAGGCGACGCTACGGCAAACAGAACCCCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050555_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.423
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAAAGCACTGAGGAC
R:
GCAGCAGTCTGGAGGGTTC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)