HsaEX0035311 @ hg38
Exon Skipping
Gene
ENSG00000050555 | LAMC3
Description
laminin subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
Coordinates
chr9:131077187-131079298:+
Coord C1 exon
chr9:131077187-131077334
Coord A exon
chr9:131077899-131078081
Coord C2 exon
chr9:131079149-131079298
Length
183 bp
Sequences
Splice sites
3' ss Seq
GGGCCTCTTCCTCCTTACAGTGA
3' ss Score
8.91
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GTACCAGGAGGTCCAGGCGGCCCAGAAAGCACTGAGGACGGCTGTGGCAGAGGTGCTGCCTGAAGCGGAAAGCGTGTTGGCCACCGTGCAGCAAGTTGGCGCAGATACAGCCCCGTACCTGGCCTTGCTGGCTTCCCCGGGAGCTCTG
Seq A exon
TGACATTAGCAGTGTCATCAGATGGACACGGGATGCAATCCCAGCTCTGCCACTCCAGCTCTGTGACCTCGGCCAAGGACTTTCCCTTCCTGAGCCTCAGTCTGTCACATAGAACTCACCCATTAGGTTATTTCGAGGCTGCTTCCATGGGAGCTGGACAGAGATTCGGGAGCAATGCACGAG
Seq C2 exon
CCTCAGAAGTCCCGGGCTGAAGACCTGGGCCTGAAGGCGAAGGCCCTGGAGAAGACAGTTGCATCATGGCAGCACATGGCCACTGAGGCTGCCCGAACCCTCCAGACTGCTGCCCAGGCGACGCTACGGCAAACAGAACCCCTCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050555_MULTIEX1-15/20=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.397
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAAAGCACTGAGGAC
R:
GCAGCAGTCTGGAGGGTTC
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development