HsaEX0035422 @ hg19
Exon Skipping
Gene
ENSG00000143418 | LASS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:14076]
Coordinates
chr1:150935434-150938764:-
Coord C1 exon
chr1:150938638-150938764
Coord A exon
chr1:150936750-150937039
Coord C2 exon
chr1:150935434-150935620
Length
290 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCCCCACCCTTTAGGGC
3' ss Score
9
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCCCTAGCCAATGGCCACCCCATCCTCAATAACAACCATC
Seq A exon
GGCCTTTGGAGGTGGAGAAGGGATCCTGCCTGCTAGCACCACATTGGAAGGGATCATCTGGTCCAGAACCCCCATTTCTATCAACTAGGAGCTGGGGGGAGTAGCTAGCCCAGAGACTTCGGGTCAGGGTTCAACAATCAGGAAGACCCAGTTCCTGAGGAAACGACAGTTCAAGAAGGGTTGGGAAGAAGGCTGTCCTCTAAAGAAGACGTCCTCTGCATTCAATGGCCCCACAGCAACAGAGTAGCTCCTTGCCTTCCACACTGCCCACCTCGTAGTTGTAGTCCCAA
Seq C2 exon
GCTACCAGTCATGTTCTTCTTGTCCTCAAAGTCATCCCCTTCAGAGCCAGAGGATATGGTCTGGATATCATCACTGTCAACCGCTGTAGCCGAAGTCTGACCAGCAGTGGGCTTTCGGCTGGTCCCACTTTCCCCCTCACTTTCTGTGCTGCTGGACAGTGTCAGGACATCCTGGGGAAGCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418-'23-20,'23-19,26-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF116763=DUF3272=PD(11.8=12.8)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGAACGCAGTGACCG
R:
GATGTCCTGACACTGTCCAGC
Band lengths:
293-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)