HsaEX0035422 @ hg38
Exon Skipping
Gene
ENSG00000143418 | CERS2
Description
ceramide synthase 2 [Source:HGNC Symbol;Acc:HGNC:14076]
Coordinates
chr1:150962958-150966288:-
Coord C1 exon
chr1:150966162-150966288
Coord A exon
chr1:150964274-150964563
Coord C2 exon
chr1:150962958-150963144
Length
290 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCCCCACCCTTTAGGGC
3' ss Score
9
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTGGTAGAAGATGAACGCAGTGACCGGGAAGAAACAGAGAGCTCAGAGGGGGAGGAGGCTGCAGCTGGGGGAGGAGCAAAGAGCCGGCCCCTAGCCAATGGCCACCCCATCCTCAATAACAACCATC
Seq A exon
GGCCTTTGGAGGTGGAGAAGGGATCCTGCCTGCTAGCACCACATTGGAAGGGATCATCTGGTCCAGAACCCCCATTTCTATCAACTAGGAGCTGGGGGGAGTAGCTAGCCCAGAGACTTCGGGTCAGGGTTCAACAATCAGGAAGACCCAGTTCCTGAGGAAACGACAGTTCAAGAAGGGTTGGGAAGAAGGCTGTCCTCTAAAGAAGACGTCCTCTGCATTCAATGGCCCCACAGCAACAGAGTAGCTCCTTGCCTTCCACACTGCCCACCTCGTAGTTGTAGTCCCAA
Seq C2 exon
GCTACCAGTCATGTTCTTCTTGTCCTCAAAGTCATCCCCTTCAGAGCCAGAGGATATGGTCTGGATATCATCACTGTCAACCGCTGTAGCCGAAGTCTGACCAGCAGTGGGCTTTCGGCTGGTCCCACTTTCCCCCTCACTTTCTGTGCTGCTGGACAGTGTCAGGACATCCTGGGGAAGCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143418-'31-36,'31-34,33-36=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATGAACGCAGTGACCG
R:
GATGTCCTGACACTGTCCAGC
Band lengths:
293-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development