HsaEX0035429 @ hg19
Exon Skipping
Gene
ENSG00000090661 | LASS4
Description
ceramide synthase 4 [Source:HGNC Symbol;Acc:23747]
Coordinates
chr19:8274187-8316133:+
Coord C1 exon
chr19:8274187-8274378
Coord A exon
chr19:8275590-8275746
Coord C2 exon
chr19:8315960-8316133
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAAATGGGTCTGCCTTCCAGGAG
3' ss Score
7.11
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
CCACGGCCCCGCCCCGGGCTCCCCCCACTCAAGCCTTTTTTCCCCTGCTGGGGGCCGAGGCCCGGCCAGGAGCAGAGTCCGGCTGCCTGGGGCGGGCGGCGCGTGTCTGCAGCTGCTCCGGGTAGCCCGCTAGGCGCGCCGTCCCCAGCCCCGCCGCCGGCCCTCGGTGCGCCCGGCCGCCTGCACCCCCAG
Seq A exon
GAGCAGCTGCTGTGAATAAACACAGAAGTGGAGCTGGGGGACTGATTAGAAGCCTCATTCAGTGCACCTGGGCCCCAGCAGGCCCAGCCAGGCGTGGAGGAAGAGGCATTGAGGACTTTCCTTACCTGTTTTTCCAGCTCACCCACTGCCAGCAGAG
Seq C2 exon
AATGCTGTCCAGTTTCAACGAGTGGTTTTGGCAGGACAGGTTCTGGTTACCACCCAATGTCACGTGGACAGAGCTAGAAGACCGGGATGGCCGTGTCTACCCCCACCCCCAGGACTTGTTGGCAGCCCTGCCCCTGGCGCTGGTCCTCCTGGCCATGCGCCTTGCCTTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090661-'0-3,'0-0,1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.017
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF067288=PIG-U=PU(13.7=36.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCACTCAAGCCTTTTT
R:
CCGGTCTTCTAGCTCTGTCCA
Band lengths:
256-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)