HsaEX0035747 @ hg19
Exon Skipping
Gene
ENSG00000106852 | LHX6
Description
LIM homeobox 6 [Source:HGNC Symbol;Acc:21735]
Coordinates
chr9:124989688-124991079:-
Coord C1 exon
chr9:124990936-124991079
Coord A exon
chr9:124990079-124990138
Coord C2 exon
chr9:124989688-124989759
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGGATCTCACTGATTGACAGTTG
3' ss Score
4.38
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
GGTCCCCCTCGGCGCAGCTCTCCGCGCTGCGCGCCCGCTGAGCCCGAGGTTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCCCCGGCGTTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAG
Seq A exon
TTGGAATTGACACTCTGGCTACCTCTTATCTTGGGCATTCACGACAATTTCTAATTGCAG
Seq C2 exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTTGAAGGGACCGCGCCGCCCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106852_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=0.000 C2=0.126
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAAGCATGAGAACGCC
R:
CTTCAAGACAGCGGGTGGTC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)