HsaEX0035747 @ hg38
Exon Skipping
Gene
ENSG00000106852 | LHX6
Description
LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
Coordinates
chr9:122227409-122228845:-
Coord C1 exon
chr9:122228657-122228845
Coord A exon
chr9:122227800-122227859
Coord C2 exon
chr9:122227409-122227480
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGGATCTCACTGATTGACAGTTG
3' ss Score
4.38
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
CTCTCCTCCTGCTCCTGCAGCAGCCTCTGCTCCCACTGCGGCTGTGGTCCCCCTCGGCGCAGCTCTCCGCGCTGCGCGCCCGCTGAGCCCGAGGTTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCCCCGGCGTTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAG
Seq A exon
TTGGAATTGACACTCTGGCTACCTCTTATCTTGGGCATTCACGACAATTTCTAATTGCAG
Seq C2 exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTTGAAGGGACCGCGCCGCCCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106852_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=0.000 C2=0.246
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAAGCATGAGAACGCC
R:
CTTCAAGACAGCGGGTGGTC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development