HsaEX0035748 @ hg38
Exon Skipping
Gene
ENSG00000106852 | LHX6
Description
LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]
Coordinates
chr9:122226848-122228845:-
Coord C1 exon
chr9:122228657-122228845
Coord A exon
chr9:122227409-122227480
Coord C2 exon
chr9:122226848-122227030
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCCCCCTCCCCCAGGTG
3' ss Score
12.77
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CTCTCCTCCTGCTCCTGCAGCAGCCTCTGCTCCCACTGCGGCTGTGGTCCCCCTCGGCGCAGCTCTCCGCGCTGCGCGCCCGCTGAGCCCGAGGTTCCCCGGCCCATGTACTGGAAGCATGAGAACGCCGCCCCGGCGTTGCCCGAGGGCTGCCGGCTGCCGGCCGAGGGCGGCCCCGCCACCGACCAG
Seq A exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTTGAAGGGACCGCGCCGCCCGCCATG
Seq C2 exon
GCTCAGTCTGACGCCGAGGCCCTGGCAGGAGCTCTGGACAAGGACGAGGGTCAGGCCTCCCCATGTACGCCCAGCACGCCATCTGTCTGCTCACCGCCCTCTGCCGCCTCCTCCGTGCCGTCTGCAGGCAAGAACATCTGCTCCAGCTGCGGCCTCGAGATCCTGGACCGATATCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106852_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.546 A=0.246 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(24.1=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAAGCATGAGAACGCC
R:
GTGAGCAGACAGATGGCGTG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development