MmuEX6100878 @ mm10
Exon Skipping
Gene
ENSMUSG00000026890 | Lhx6
Description
LIM homeobox protein 6 [Source:MGI Symbol;Acc:MGI:1306803]
Coordinates
chr2:36103346-36105271:-
Coord C1 exon
chr2:36105124-36105271
Coord A exon
chr2:36103894-36103965
Coord C2 exon
chr2:36103346-36103528
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTCCCCCTCCCCCAGGTG
3' ss Score
12.32
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CGAGGCCCCACTCTGCGCCTCTCTTCGCACTGCGCGCCCACCGAGCCCTCCCGCTCCCGGGCCCATGTACTGGAAGCATGAGAGCGCCGCCCCGGCGCTGCCCGAGGGCTGCCGGTTGCCGGCGGAGGGCGGCCCCACCACCGACCAG
Seq A exon
GTGATGGCCCAGCCAGGGTCCGGCTGCAAAGCGACCACCCGCTGTCTCGAAGGGACCGCTCCGCCTGCCATG
Seq C2 exon
GCTCAGTCAGACGCAGAGGCCTTGGCAGGCGCTCTGGACAAGGACGAAGGTAGAGCCTCCCCATGTACGCCCAGCACACCGTCTGTCTGCTCGCCGCCCTCTGCTGCCTCTTCCGTGCCGTCTGCCGGCAAGAATATCTGCTCCAGTTGCGGTCTGGAGATCCTGGACCGGTATCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026890-'1-5,'1-3,3-5=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.090 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0041217=LIM=PU(24.1=23.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGAAGCATGAGAGCGC
R:
CGAGCAGACAGACGGTGTG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types